@@ -26,8 +26,8 @@ Scripts and data used in the analysis and visualisation in the manuscript ``Trai
...
@@ -26,8 +26,8 @@ Scripts and data used in the analysis and visualisation in the manuscript ``Trai
| [Column names] 'Region': Independent region (loci),
| [Column names] 'Region': Independent region (loci),
| 'n_associated_JASS': out of 1776 traitsets containing GIANT_BMI, how many times the region was associated by JASS while not associated by GIANT_BMI.
| 'n_associated_JASS': out of 1776 traitsets containing GIANT_BMI, how many times the region was associated by JASS while not associated by GIANT_BMI.
| 'n_associated_JASS_corrected': same as 'n_associated_JASS' except that the significance by JASS is evaluated by q-value (p-value x 1776).
| 'n_associated_JASS_corrected': same as 'n_associated_JASS' except that the significance by JASS is evaluated by q-value (p-value x 1776).
| 'P_small_gwas': P-value in the smaller univariate GWAS (GIANT_BMI).
| 'P_small_gwas': P-value in the smaller univariate GWAS (GIANT_BMI). (It's the minimum across SNPs in the same region.)
| 'min_P_jass_joint': minimum P-value of the region by JASS across 1776 traitsets with GIANT_BMI
| 'min_P_jass_joint': minimum P-value of the region by JASS across 1776 traitsets with GIANT_BMI. -1 if the region is associated by the small univ BMI GWAS.
| 'P_univ_large_gwas': P-value in the larger univariate GWAS.
| 'P_univ_large_gwas': P-value in the larger univariate GWAS.
| 'evaluate': comparison between JASS and large GWAS results.
| 'evaluate': comparison between JASS and large GWAS results.
| 'JASS': whether JASS detected the region as significant.
| 'JASS': whether JASS detected the region as significant.
