version 1.5 offers the possibility to treat the parts of pair-end reads separately in the cms.
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- NEWS 4 additions, 0 deletionsNEWS
- configure.ac 1 addition, 1 deletionconfigure.ac
- doc/rock.pod 7 additions, 0 deletionsdoc/rock.pod
- src/CountMinSketch.hpp 53 additions, 26 deletionssrc/CountMinSketch.hpp
- src/Filter.hpp 13 additions, 19 deletionssrc/Filter.hpp
- src/FqAuxBackend.cpp 1 addition, 1 deletionsrc/FqAuxBackend.cpp
- src/FqBaseBackend.cpp 2 additions, 2 deletionssrc/FqBaseBackend.cpp
- src/FqBaseBackend.h 3 additions, 2 deletionssrc/FqBaseBackend.h
- src/FqMainBackend.cpp 12 additions, 5 deletionssrc/FqMainBackend.cpp
- src/FqMainBackend.h 5 additions, 0 deletionssrc/FqMainBackend.h
- src/Makefile.am 2 additions, 2 deletionssrc/Makefile.am
- src/ROCKparams.cpp 21 additions, 4 deletionssrc/ROCKparams.cpp
- src/ROCKparams.h 7 additions, 3 deletionssrc/ROCKparams.h
- src/fqreader.cpp 3 additions, 1 deletionsrc/fqreader.cpp
- src/fqreader.h 1 addition, 1 deletionsrc/fqreader.h
- src/main_utils.cpp 1 addition, 0 deletionssrc/main_utils.cpp
- src/read_utils.cpp 12 additions, 6 deletionssrc/read_utils.cpp
- src/read_utils.h 2 additions, 1 deletionsrc/read_utils.h
- src/rock.cpp 2 additions, 1 deletionsrc/rock.cpp
- src/rock_commons.h 6 additions, 0 deletionssrc/rock_commons.h
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