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Commit 646fb840 authored by Veronique Legrand's avatar Veronique Legrand
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added exception for debug

parent 113bad5a
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...@@ -77,12 +77,12 @@ void getDNASeqstr(FqBaseBackend* fq_files_be [], ...@@ -77,12 +77,12 @@ void getDNASeqstr(FqBaseBackend* fq_files_be [],
f_id2=fid_stored &mask_fid; f_id2=fid_stored &mask_fid;
unsigned long offset1=j*UINT_MAX+sr.read_a1; unsigned long offset1=j*UINT_MAX+sr.read_a1;
getFqRecord(fq_files_be,f_id1,offset1,dna_seqs[0].fq_record_buf);
try { try {
getFqRecord(fq_files_be,f_id1,offset1,dna_seqs[0].fq_record_buf);
processFqRecord(p_dna_seqs); processFqRecord(p_dna_seqs);
} catch (int e) { } catch (int e) {
cout<<"j="<<j<<" sr content: a1="<<sr.read_a1<<" a2= "<<sr.read_a2<<endl; cout<<"j="<<j<<" sr content: a1="<<sr.read_a1<<" a2= "<<sr.read_a2<<endl;
cout<<"pb reading at offset1="<<offset1<<endl; cout<<"pb reading/seeking at offset1="<<offset1<<endl;
cout<<"got: "<<endl; cout<<"got: "<<endl;
cout<<dna_seqs[0].fq_record_buf<<endl; cout<<dna_seqs[0].fq_record_buf<<endl;
} }
...@@ -93,7 +93,7 @@ void getDNASeqstr(FqBaseBackend* fq_files_be [], ...@@ -93,7 +93,7 @@ void getDNASeqstr(FqBaseBackend* fq_files_be [],
getFqRecord(fq_files_be,f_id2,offset2,dna_seqs[1].fq_record_buf); getFqRecord(fq_files_be,f_id2,offset2,dna_seqs[1].fq_record_buf);
} catch (int e) { } catch (int e) {
cout<<"j="<<j<<" sr content: a1="<<sr.read_a1<<" a2= "<<sr.read_a2<<endl; cout<<"j="<<j<<" sr content: a1="<<sr.read_a1<<" a2= "<<sr.read_a2<<endl;
cout<<"pb reading at offset2="<<offset2<<endl; cout<<"pb reading/seeking at offset2="<<offset2<<endl;
cout<<"got: "<<endl; cout<<"got: "<<endl;
cout<<dna_seqs[1].fq_record_buf<<endl; cout<<dna_seqs[1].fq_record_buf<<endl;
} }
......
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