Commits · b68a5b0411f3fd5962f96da3eafc0ed34a28d724 · Véronique LEGRAND / ROCK

May 05, 2022
- Update README.md · b68a5b04
  Véronique LEGRAND authored 2 years ago
  
  b68a5b04
May 04, 2022
- Update README.md · b0be7a8e
  Véronique LEGRAND authored 2 years ago
  
  b0be7a8e
- renamed COPYING file to LICENSE · bd566789
  Veronique Legrand authored 2 years ago
  
  bd566789
- Merge branch 'master' of https://gitlab.pasteur.fr/vlegrand/ROCK · fd866d63
  Veronique Legrand authored 2 years ago
  
  fd866d63
- merged branch 2.0_beta; preparing version 2.0 · 00f80f41
  Veronique Legrand authored 2 years ago
  
  00f80f41
- Update .gitlab-ci.yml; added CI for ubuntu operating system · f894e199
  Véronique LEGRAND authored 2 years ago
  
  f894e199
May 03, 2022
- Merge branch 'master' of https://gitlab.pasteur.fr/vlegrand/ROCK · 42a28633
  Veronique Legrand authored 2 years ago
  
  42a28633
- fixed error in shell script for comparing character strings · 174a0fac
  Veronique Legrand authored 2 years ago
  
  174a0fac
May 02, 2022
- updated README · 8e0fe601
  Véronique LEGRAND authored 2 years ago
  
  8e0fe601
- README.md · 458cc0c8
  Véronique LEGRAND authored 2 years ago
  
  458cc0c8
- Update README.md · 71b75b70
  Véronique LEGRAND authored 2 years ago
  
  71b75b70
- Update README.md · 4d3a7de3
  Véronique LEGRAND authored 2 years ago
  
  4d3a7de3
Apr 29, 2022
- work in progress for version 2.0; fixed test; still todo : merge tests with... · f7532528
  Veronique Legrand authored 2 years ago
```
 work in progress for version 2.0; fixed test; still todo : merge tests with those from version 1.9.6
```
  f7532528
Apr 28, 2022
- work in progress; adding -p option to be aple to process PE separately in some cases · 166a2d99
  Veronique Legrand authored 2 years ago
  
  166a2d99
Apr 15, 2022

version 2.0_beta where PE reads are processed separately and selected or... · 91c02af3

version 2.0_beta where PE reads are processed separately and selected or removed from the cms if at least one of the PE has a median coverage below threshold.

91c02af3

Apr 12, 2022
- added back include at the right place this time to fix compilation issue on OS X · 91f4e6c4
  Veronique Legrand authored 3 years ago
  
  91f4e6c4
Mar 10, 2022
- removed deprecated and unuseful include · ff5da400
  Veronique Legrand authored 3 years ago
  
  ff5da400
Jan 24, 2022
- Update paper.md v1.9.6 · b266948a
  Alexis CRISCUOLO authored 3 years ago
  
  b266948a
Jan 20, 2022
- Update .gitlab-ci.yml · d1690cd4
  Véronique LEGRAND authored 3 years ago
  
  d1690cd4
- Update .gitlab-ci.yml · 541b93f7
  Véronique LEGRAND authored 3 years ago
  
  541b93f7
- Update .gitlab-ci.yml · 1cbe3de3
  Véronique LEGRAND authored 3 years ago
  
  1cbe3de3
- Delete configure · a6387826
  Véronique LEGRAND authored 3 years ago
  
  a6387826
- Update .gitlab-ci.yml to handle centOS 8 which is the operating system of the maestro cluster. · 7bffaae0
  Véronique LEGRAND authored 3 years ago
```
Added checking that make distcheck works well.
```
  7bffaae0
- fixed distcheck; updated files dor automake 1.16.3 · 983f0197
  Veronique Legrand authored 3 years ago
  
  2 tags
  
  983f0197
Jan 19, 2022
- updated test case with + char in identifier for PE reads. · ac58b375
  Veronique Legrand authored 3 years ago
  
  ac58b375
Jan 12, 2022
- new data files for tests; with scores startung by @ · 131facc9
  Veronique Legrand authored 3 years ago
  
  131facc9
Jan 07, 2022
- New version 1.9.6 with bugfix · 0e704854
  Veronique Legrand authored 3 years ago
  
  0e704854
- fixed bug that led to erroneous score and results when a + char is encountered if read identifier · 973909d7
  Veronique Legrand authored 3 years ago
  
  973909d7
Jan 06, 2022
- put back these files taht are usefu and that I had removed by mistake · f06a9bbb
  Veronique Legrand authored 3 years ago
  
  f06a9bbb
- work in progress; still have to do the fix for processBuffer in FqAuxBackend · 586003f0
  Veronique Legrand authored 3 years ago
  
  586003f0
Jan 05, 2022
- data file for testing the case of + char in read id and score · 39740dcb
  Veronique Legrand authored 3 years ago
  
  39740dcb
Dec 17, 2021
- Update README.md v1.9.5 · 8ef3d37f
  Alexis CRISCUOLO authored 3 years ago
  
  8ef3d37f
Dec 10, 2021
- Update paper.md v1.9.5 · cefd9d42
  Alexis CRISCUOLO authored 3 years ago
  
  cefd9d42
Dec 09, 2021
- fixed bug related to the handling of '+' char in scores; did some leaning; updated version number · 8c0033d1
  Veronique Legrand authored 3 years ago
  
  v_1.9.5
  
  8c0033d1
Sep 05, 2021
- Update README.md · 04c52c2e
  Alexis CRISCUOLO authored 3 years ago
  
  04c52c2e
Sep 01, 2021
- source code of Example · d5756985
  Alexis CRISCUOLO authored 3 years ago
  
  d5756985
- procedure source code for Example · 24b5752e
  Alexis CRISCUOLO authored 3 years ago
  
  24b5752e
- Update paper.md · 85fe26d2
  Alexis CRISCUOLO authored 3 years ago
  
  85fe26d2
Aug 31, 2021
- added paper for publication in JOSS · e846996c
  Veronique Legrand authored 3 years ago
  
  e846996c
Aug 26, 2021
- updated News · 1efb2ca2
  Veronique Legrand authored 3 years ago
  
  v_1.9.4
  
  1efb2ca2