snakefile update

Snakefile_clique_experiments

@@ -3,7 +3,7 @@ pbar = ProgressBar()
 
 
 OUTDIR="snake_experiments" if "outdir" not in config else config["outdir"]
-trials=1
+trials=1 if "trials" not in config else config["trials"]
 N=[1000] if "n" not in config else config["n"] # Number of molecule to simulate
 D=[10] if "d" not in config else config["d"] # Average coverage of each molecule
 M=[2, 3] if "m" not in config else config["m"] # Average number of molecule per barcode