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Commit a8e1796a authored by Mélanie  HENNART's avatar Mélanie HENNART
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Update README.md

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......@@ -65,12 +65,14 @@ If Database exist :
The directory example contains allelic profiles file of Elizabethkingia.
This file is download on the site following : http://bigsdb.pasteur.fr/elizabethkingia/elizabethkingia.html
It contains 183 allelic profiles of the bacteria Elizabethkingia, with 1546 loci.
BIGSdb_eliza.txt contains 100 allelic profiles of the bacteria Elizabethkingia, with 1546 loci.
BIGSdb_eliza_update.txt contains 12 allelic profiles of the bacteria Elizabethkingia, with 1546 loci.
It's for update when BIGSdb_eliza.lin is create.
Identifiants bacterial is in column 1-2 and all others is loci.
In the example folder, you have example files from the following command:
# Create DataBase LIN :
### Create DataBase LIN :
```bash
python LINcode.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100
......@@ -104,7 +106,7 @@ id isolate [ 10. 20. 50. 80. 99.68 99.74 99.81 99.87 99.94 100.
22 SRR3240397 0_0_0_0_0_0_0_0_0_0
```
# Update DataBase LIN :
### Update DataBase LIN :
```bash
python LINcode.py -i BIGSdb_eliza_update.txt -r BIGSdb_eliza.lin -t 1-2 -l 3-
......
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