Skip to content
Snippets Groups Projects
Commit 1adaefa5 authored by mrethore's avatar mrethore
Browse files

Minor update

parent ccd3b96f
No related branches found
No related tags found
1 merge request!14Completion of missing amr classifications
......@@ -153,7 +153,7 @@ def armfinder_to_table(data_resistance:pd.DataFrame) -> pd.DataFrame:
gene = data_resistance['Gene symbol'][res] + dico_Method[data_resistance['Method'][res]]
# Search for certain cases of interruption due to a contig end that AMRfinder is unable to find.
if is_contig_edge(data_resistance.iloc[res]) :
data_resistance['Method'][res] = "CTRL_CONTIG_END"
data_resistance.loc[res, 'Method'] = "CTRL_CONTIG_END"
if ('tox' in data_resistance['Gene symbol'][res]) and \
(float(data_resistance['% Coverage of reference sequence'][res]) != 100.00) and \
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment