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Biodiversity and Epidemiology of Bacterial Pathogens
diphtOscan
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35d2083e
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35d2083e
authored
8 months ago
by
mrethore
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removing fam.tab duplicate
parent
d1aac95c
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!13
Corynebacterium resistance database update
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data/resistance/Corynebacterium_diphtheriae/fam_Cd.tab
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data/resistance/Corynebacterium_diphtheriae/fam_Cd.tab
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data/resistance/Corynebacterium_diphtheriae/fam_Cd.tab
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35d2083e
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@@ -11,13 +11,10 @@ narJ MOLECULAR_NITRATE narJ - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 1 MOLECULAR_BIOV
narH MOLECULAR_NITRATE narH - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 1 MOLECULAR_BIOVAR MOLECULAR_BIOVAR narIJHK narIJHK Corynebacterium diphtheriae nitrate reductase subunit beta narH
narG MOLECULAR_NITRATE narG - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 1 MOLECULAR_BIOVAR MOLECULAR_BIOVAR narG narG Corynebacterium diphtheriae nitrate reductase subunit alpha narG
narK MOLECULAR_NITRATE narK - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 1 MOLECULAR_BIOVAR MOLECULAR_BIOVAR narIJHK narIJHK Corynebacterium diphtheriae MFS transporter narK
pbp2m AMR pbp2m - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR BETA-LACTAM PENICILLIN Corynebacterium diphtheriae beta-lactam resistant_PBP2M
VIRULENCE_Corynebacterium VIRULENCE - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE
tox VIRULENCE_Corynebacterium - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE
tox_pseudotuberculosis tox tox_pseudotuberculosis - 0.00 0.00 60.00 80.00 90.00 70.00 90.00 25.00 1 VIRULENCE VIRULENCE TOXIN TOXIN Corynebacterium pseudotuberculosis diphtheria toxin precursor tox
tox_ulcerans tox tox_ulcerans - 0.00 0.00 60.00 80.00 90.00 70.00 90.00 25.00 1 VIRULENCE VIRULENCE TOXIN TOXIN Corynebacterium ulcerans diphtheria toxin precursor tox
tox_diphtheriae tox tox_diphtheriae - 0.00 0.00 60.00 80.00 90.00 70.00 90.00 25.00 1 VIRULENCE VIRULENCE TOXIN TOXIN Corynebacterium diphtheriae diphtheria toxin precursor tox
pld VIRULENCE_Corynebacterium - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE
pld_pseudotuberculosis pld pld_pseudotuberculosis - 0.00 0.00 60.00 80.00 90.00 70.00 90.00 25.00 1 VIRULENCE VIRULENCE OTHER_TOXINS OTHER_TOXINS Corynebacterium pseudotuberculosis Phospholipase D
pld_ulcerans pld pld_ulcerans - 0.00 0.00 60.00 80.00 90.00 70.00 90.00 25.00 1 VIRULENCE VIRULENCE OTHER_TOXINS OTHER_TOXINS Corynebacterium ulcerans Phospholipase D
rbp VIRULENCE_Corynebacterium rbp - 0.00 0.00 60.00 80.00 90.00 70.00 90.00 25.00 1 VIRULENCE VIRULENCE OTHER_TOXINS OTHER_TOXINS Putative ribosome binding protein
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@@ -39,25 +36,10 @@ DIP2014 ADHESIN_Corynebacterium DIP2014 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.0
RhuM ADHESIN_Corynebacterium RhuM - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN VIRULENCE/ADHESIN VIRULENCE/ADHESIN RhuM-like protein
cpp ADHESIN_Corynebacterium cpp - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN VIRULENCE/ADHESIN VIRULENCE/ADHESIN Endoglycosidase of the EndoE family
DIP2093 ADHESIN_Corynebacterium DIP2093 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 ADHESIN ADHESIN VIRULENCE/ADHESIN VIRULENCE/ADHESIN Csh family fibrillar adhesin-related protein
cbpA ADHESIN_Corynebacterium cbpA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN VIRULENCE/ADHESIN VIRULENCE/ADHESIN Cna B-type domain-containing protein
DIP0543 ADHESIN_Corynebacterium DIP0543 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN VIRULENCE/ADHESIN VIRULENCE/ADHESIN Putative exo-sialidase NanH
SpaA-type_pili ADHESIN_Corynebacterium - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 ADHESIN ADHESIN
spaA SpaA-type_pili spaA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaA-type_pili_diphtheriae SpaA-type_pili_diphtheriae SpaA-type pili major subunit SpaA
srtA SpaA-type_pili srtA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaA-type_pili_diphtheriae SpaA-type_pili_diphtheriae Fimbrial associated sortase srtA
spaB SpaA-type_pili spaB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaA-type_pili_diphtheriae SpaA-type_pili_diphtheriae SpaA-type pili minor subunit SpaB
spaC SpaA-type_pili spaC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaA-type_pili_diphtheriae SpaA-type_pili_diphtheriae SpaA-type pili minor subunit SpaC
SpaD-type_pili ADHESIN_Corynebacterium - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 ADHESIN ADHESIN
srtB SpaD-type_pili srtB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaD-type_pili_diphtheriae SpaD-type_pili_diphtheriae Fimbrial associated sortase srtB
spaD SpaD-type_pili spaD - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaD-type_pili_diphtheriae SpaD-type_pili_diphtheriae SpaD-type pili minor subunit SpaD
srtC SpaD-type_pili srtC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaD-type_pili_diphtheriae SpaD-type_pili_diphtheriae Fimbrial associated sortase srtC
spaE SpaD-type_pili spaE - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaD-type_pili_diphtheriae SpaD-type_pili_diphtheriae SpaD-type pili minor subunit SpaE
spaF SpaD-type_pili spaF - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaD-type_pili_diphtheriae SpaD-type_pili_diphtheriae SpaD-type pili minor subunit SpaF
SpaH-type_pili ADHESIN_Corynebacterium - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 ADHESIN ADHESIN
spaI SpaH-type_pili spaI - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaH-type_pili_diphtheriae SpaH-type_pili_diphtheriae SpaH-type pili minorsubunit SpaI
srtE SpaH-type_pili srtE - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaH-type_pili_diphtheriae SpaH-type_pili_diphtheriae Fimbrial associated sortase srtE
srtD SpaH-type_pili srtD - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaH-type_pili_diphtheriae SpaH-type_pili_diphtheriae Fimbrial associated sortase srtD
spaH SpaH-type_pili spaH - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaH-type_pili_diphtheriae SpaH-type_pili_diphtheriae SpaH-type pili minor subunit SpaH
spaG SpaH-type_pili spaG - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaH-type_pili_diphtheriae SpaH-type_pili_diphtheriae SpaH-type pili minor subunit SpaG
Surface-anchored pilus proteins ADHESIN_Corynebacterium - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 ADHESIN ADHESIN
sapA Surface-anchored pilus proteins sapA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SapADE_diphtheriae SapADE_diphtheriae Surface-anchored pilus proteins sapA
sapD Surface-anchored pilus proteins sapD - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SapADE_diphtheriae SapADE_diphtheriae Surface-anchored pilus proteins sapD
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