Commits · dev · Amandine PERRIN / pipeline_annotation

17 Dec, 2021 3 commits
- version 1.3.1-dev4 · bb3e14b9
  Amandine PERRIN authored Dec 17, 2021
```
tol is now considered as a float when given in config file
```
  bb3e14b9
- debug functional test · 5bec5d50
  Amandine PERRIN authored Dec 17, 2021
  
  5bec5d50
- debug functional test · 5bf109e5
  Amandine PERRIN authored Dec 17, 2021
  
  5bf109e5
16 Dec, 2021 5 commits
- Refseq can have several entries with same strain. Take into account in tests · c164bc04
  Amandine PERRIN authored Dec 16, 2021
  
  c164bc04
- Refseq can have several entries with same strain. Take into account in tests · 5a60667c
  Amandine PERRIN authored Dec 16, 2021
  
  5a60667c
- Refseq can have several entries with same strain. Take into account in tests · 2b05be3b
  Amandine PERRIN authored Dec 16, 2021
  
  2b05be3b
- tests for tol parameter as float · a97016e3
  Amandine PERRIN authored Dec 16, 2021
  
  a97016e3
- tol parameter is a float, not int · 813ea544
  Amandine PERRIN authored Dec 16, 2021
  
  813ea544
05 Oct, 2021 2 commits
- change tab to space between rep name and info in Replicons directory · ea85c66d
  Amandine PERRIN authored Oct 05, 2021
  
  ea85c66d
- gff headers with 1 space instead of 2 · 647a117b
  Amandine PERRIN authored Oct 05, 2021
  
  647a117b
16 Sep, 2021 9 commits
- Merge branch 'documentation' · 2c04051c
  Amandine PERRIN authored Sep 16, 2021
  
  2c04051c
- add warning genome-name without space · 1f5223be
  Amandine PERRIN authored Sep 16, 2021
  
  1f5223be
- version 1.3.1-dev3 · 809500e9
  Amandine PERRIN authored Sep 16, 2021
  
  809500e9
- gene name starting by genome name · 136e1c33
  Amandine PERRIN authored Sep 16, 2021
  
  136e1c33
- Merge branch 'master' into dev · 072bbd29
  Amandine PERRIN authored Sep 16, 2021
  
  072bbd29
- Merge branch 'documentation' into dev · 4fc48470
  Amandine PERRIN authored Sep 16, 2021
  
  4fc48470
- add warning on protein names for align step · 40cf4cab
  Amandine PERRIN authored Sep 16, 2021
  
  40cf4cab
- add test when a genome name is included in another one · 64c45ef9
  Amandine PERRIN authored Sep 16, 2021
  
  64c45ef9
- Check that genome name is not included in another genome name · 105574f8
  Amandine PERRIN authored Sep 16, 2021
  
  105574f8
27 Aug, 2021 5 commits
- typo readme · cabd19b5
  Amandine PERRIN authored Aug 27, 2021
  
  cabd19b5
- Merge branch 'dev' · df6c24bc
  Amandine PERRIN authored Aug 27, 2021
  
  df6c24bc
- no target for downloads badge · 6d166bde
  Amandine PERRIN authored Aug 27, 2021
  
  6d166bde
- add downloads badge · 01fe2918
  Amandine PERRIN authored Aug 27, 2021
  
  01fe2918
- add gitter badge commented · 4850c814
  Amandine PERRIN authored Aug 27, 2021
```
gitter badge link is in the readme source file, but commented. See if we really add it later.
```
  4850c814
02 Aug, 2021 16 commits
- no need to export htmlcov from test stage · 31829eda
  Amandine PERRIN authored Aug 02, 2021
  
  31829eda
- no report shown for test steps · 61566189
  Amandine PERRIN authored Aug 02, 2021
  
  61566189
- remove duplicated info for deploy stage · 9c8fb911
  Amandine PERRIN authored Aug 02, 2021
  
  9c8fb911
- coverage html before report · 26ae10d1
  Amandine PERRIN authored Aug 02, 2021
  
  26ae10d1
- version 1.3.1-dev2 · 0ec2a0d3
  Amandine PERRIN authored Aug 02, 2021
  
  0ec2a0d3
- new functionality added, as suggested in issue #17 · 09c9d281
  Amandine PERRIN authored Aug 02, 2021
  
  09c9d281
- report for all tests now working! · e9312e35
  Amandine PERRIN authored Aug 02, 2021
  
  e9312e35
- Use relative paths when generating coverage, instead of absolute paths · fb98ef92
  Amandine PERRIN authored Aug 02, 2021
  
  fb98ef92
- change path for coverage report in setup.cfg · 8b4b7d72
  Amandine PERRIN authored Aug 02, 2021
  
  8b4b7d72
- for each job of test stage, show directory · 39e1a671
  Amandine PERRIN authored Aug 02, 2021
  
  39e1a671
- separate tests into 2 different stage names · 8c9d74cf
  Amandine PERRIN authored Aug 02, 2021
  
  8c9d74cf
- coverage report when func test is before unit test · cdd4de57
  Amandine PERRIN authored Aug 02, 2021
  
  cdd4de57
- add tests for clean_str in config parser · 3d6dbaa5
  Amandine PERRIN authored Aug 02, 2021
  
  3d6dbaa5
- get report of unit tests coverage · 318321a2
  Amandine PERRIN authored Aug 02, 2021
  
  318321a2
- func test first · d78b8866
  Amandine PERRIN authored Aug 02, 2021
  
  d78b8866
- show content of .coverage files · 560ff54c
  Amandine PERRIN authored Aug 02, 2021
  
  560ff54c