Commits · dev · Amandine PERRIN / pipeline_annotation

31 Jan, 2023 2 commits
- Merge branch 'master' into dev · e8228b46
  Amandine PERRIN authored Jan 31, 2023
  
  e8228b46
- Update conditions on genome name · 31756889
  Amandine PERRIN authored Jan 31, 2023
  
  31756889
12 Jan, 2023 4 commits
- add fastree bin · 9a3ac578
  Amandine PERRIN authored Jan 12, 2023
  
  9a3ac578
- Remove fasttree bin · bed88125
  Amandine PERRIN authored Jan 12, 2023
  
  bed88125
- add fasttree bin · b5f98102
  Amandine PERRIN authored Jan 12, 2023
  
  b5f98102
- update docker image · 01a08388
  Amandine PERRIN authored Jan 12, 2023
  
  01a08388
03 Jan, 2023 1 commit
- version 1.4.0 · 1ee65c56
  Amandine PERRIN authored Jan 03, 2023
  
  1ee65c56
02 Jan, 2023 26 commits
- Use number of available cpu instead of total number of cpus in tests · dbac6af0
  Amandine PERRIN authored Jan 02, 2023
  
  dbac6af0
- indent error · e7dfba08
  Amandine PERRIN authored Jan 02, 2023
  
  e7dfba08
- indent error · 5afa4d9f
  Amandine PERRIN authored Jan 02, 2023
  
  5afa4d9f
- add matrix options in fastme tests · bdb1a5c3
  Amandine PERRIN authored Jan 02, 2023
  
  bdb1a5c3
- add matrix options in fastme tests · c0fb3806
  Amandine PERRIN authored Jan 02, 2023
  
  c0fb3806
- add matrix options in fastme tests · 3abab917
  Amandine PERRIN authored Jan 02, 2023
  
  3abab917
- solve conflicts · 78745305
  Amandine PERRIN authored Jan 02, 2023
  
  78745305
- Update test_fastme.py · 0b4066f1
  Amandine PERRIN authored Jan 02, 2023 and Amandine PERRIN committed Jan 02, 2023
  
  0b4066f1
- Add possibility to write distance matrix with fastme · 10841c12
  Amandine PERRIN authored Jan 02, 2023
  
  10841c12
- merge conflicts · facdd541
  Amandine PERRIN authored Jan 02, 2023
  
  facdd541
- conflicts merged · 0eec3fac
  Amandine PERRIN authored Jan 02, 2023
  
  0eec3fac
- Update test_fastme.py · f8eb9bcf
  Amandine PERRIN authored Jan 02, 2023 and Amandine PERRIN committed Jan 02, 2023
  
  f8eb9bcf
- Update test_fastme.py · c630f64b
  Amandine PERRIN authored Jan 02, 2023 and Amandine PERRIN committed Jan 02, 2023
  
  c630f64b
- Update test_fastme.py · 35fef7d7
  Amandine PERRIN authored Jan 02, 2023
  
  35fef7d7
- Add possibility to write distance matrix with fastme · 07603b56
  Amandine PERRIN authored Jan 02, 2023
  
  07603b56
- fix conflict fastme unit tests · f15e9b51
  Amandine PERRIN authored Jan 02, 2023
  
  f15e9b51
- revert changes for fastme · 68e0ce15
  Amandine PERRIN authored Jan 02, 2023
  
  68e0ce15
- change taxid to compare refseq vs genbank · ec79f216
  Amandine PERRIN authored Jan 02, 2023
  
  ec79f216
- Merge github master · 2691400e
  Amandine PERRIN authored Jul 25, 2022
  
  2691400e
- Revert "add option to write distance matrix with fastme" · fa50c722
  Amandine PERRIN authored Jul 25, 2022
```
This reverts commit 29da5eb7.
```
  fa50c722
- remove argparse from requirements · acadbd4c
  Amandine PERRIN authored Dec 07, 2022 and Amandine PERRIN committed Jan 02, 2023
```
Solving issue #38:  argparse is bundled with python, so we do not need to add it to the requirements
```
  acadbd4c
- Merge branch 'master' into dev · ee199d61
  Amandine PERRIN authored Jan 02, 2023
  
  ee199d61
- update refseq download test · ba9b28ec
  Amandine PERRIN authored Jan 02, 2023
  
  ba9b28ec
- Wrong log level · 2b75685e
  Amandine PERRIN authored Jan 02, 2023
  
  2b75685e
- Closes issue #37 · b6f6ae08
  Amandine PERRIN authored Jan 02, 2023
```
It now gets the number of CPUs available to Panacota process, and not the total number of CPUs on the machine
```
  b6f6ae08
- Closes issue #37 · b803aba2
  Amandine PERRIN authored Jan 02, 2023
```
It now gets the number of CPUs available to Panacota process, and not the total number of CPUs on the machine
```
  b803aba2
07 Dec, 2022 1 commit

remove argparse from requirements · a0a06e9a

Amandine PERRIN authored Dec 07, 2022

Solving issue #38:  argparse is bundled with python, so we do not need to add it to the requirements

a0a06e9a

25 Jul, 2022 6 commits
- change taxid to compare refseq vs genbank · 0896f494
  Amandine PERRIN authored Jul 25, 2022
  
  0896f494
- option write distance matrix in 'all' module · c58251ff
  Amandine PERRIN authored Jul 25, 2022
  
  c58251ff
- test norefseq removed for now · c4a9bcae
  Amandine PERRIN authored Jul 25, 2022
  
  c4a9bcae
- typo in previous comit · 1f4594e7
  Amandine PERRIN authored Jul 25, 2022
  
  1f4594e7
- update test on tree module · 0130f6fd
  Amandine PERRIN authored Jul 25, 2022
  
  0130f6fd
- adapt tests with new 'write_mat' option · b1408e91
  Amandine PERRIN authored Jul 25, 2022
  
  b1408e91