Commits · dev · Amandine PERRIN / panacota

Jul 25, 2022
- Add write_mat option to example configfile · c05538a8
  Amandine PERRIN authored 2 years ago
  
  c05538a8
Jul 08, 2021
- update example config · 7052b051
  Alexey Zabelkin authored 4 years ago
  
  7052b051
Jun 15, 2021
- change command example align step · a5402006
  Amandine PERRIN authored 4 years ago
  
  a5402006
Jun 10, 2021
- update command lines for all examples · 4d18481f
  Amandine PERRIN authored 4 years ago
  
  4d18481f
- add --info option for annotate step in example · 39b4cdc3
  Amandine PERRIN authored 4 years ago
  
  39b4cdc3
Jun 02, 2021
- --boot option is int and not bool · d2eacead
  Amandine PERRIN authored 4 years ago
  
  d2eacead
Mar 05, 2021
- Add command to directly run example for pan · 0a6bd9f3
  Amandine PERRIN authored 4 years ago
  
  0a6bd9f3
- Add file to directly run core example · c70d55ac
  Amandine PERRIN authored 4 years ago
  
  c70d55ac
- add files to directly run example align step · e56756cd
  Amandine PERRIN authored 4 years ago
  
  e56756cd
- add command to directly run tree from Example · 295f845e
  Amandine PERRIN authored 4 years ago
  
  295f845e
- update example conffile · bf87c958
  Amandine PERRIN authored 4 years ago
  
  bf87c958
Feb 17, 2021
- add --small option · d63ca806
  Amandine PERRIN authored 4 years ago
  d63ca806
- Add new args to example configfile · d42bf462
  Amandine PERRIN authored 4 years ago
  
  d42bf462
Feb 15, 2021
- Put all default parameters in ex configfile · 808ebf8b
  Amandine PERRIN authored 4 years ago
  
  808ebf8b
Feb 12, 2021
- Add ex configfile · 184147b5
  Amandine PERRIN authored 4 years ago
  
  184147b5
Sep 02, 2020
- Remove results of Examples · d511a5c1
  Amandine PERRIN authored 4 years ago
  
  d511a5c1
- Add commands for example · 45f5b54a
  Amandine PERRIN authored 4 years ago
  
  45f5b54a
Aug 21, 2020
- update typo README · 5b1c37b0
  Amandine PERRIN authored 4 years ago
  
  5b1c37b0
Aug 18, 2020
- backup before lunch august 18 · e1b024f0
  Amandine PERRIN authored 4 years ago
  
  e1b024f0
Dec 09, 2019
- Modify results of annotate module · c92c8d77
  Amandine PERRIN authored 5 years ago
  c92c8d77
Dec 05, 2019
- remove old results of annotation step · 874291a0
  Amandine PERRIN authored 5 years ago
  
  874291a0
- Add results of annotation with prokka · 3407d68a
  Amandine PERRIN authored 5 years ago
  
  3407d68a
- annotate is step 2. step 1 is prepare · e1a53c00
  Amandine PERRIN authored 5 years ago
  
  e1a53c00
- Update Example results for annotate step · 5e433500
  Amandine PERRIN authored 5 years ago
  
  5e433500
Dec 03, 2019
- Add example results for annotation with prodigal · d07468a2
  Amandine PERRIN authored 5 years ago
  
  d07468a2
- genomes -> genomes_init · 12efd8c3
  Amandine PERRIN authored 5 years ago
  
  12efd8c3
Jul 30, 2019
- Add small contig so that nbcontigs != L90 for genome2 · 24132f78
  Amandine PERRIN authored 5 years ago
  
  24132f78
Apr 29, 2019
- change genomeAPCAT -> PanACoTA dans les commandes pour les exemples · c45a438d
  Amandine PERRIN authored 6 years ago
  
  c45a438d
Feb 14, 2019
- Add commands to run all steps of example · 15dcc011
  Amandine PERRIN authored 6 years ago
  
  15dcc011
Feb 12, 2019
- Add result of genomeAPCAT command on genomes+input-file · 18d3246a
  Amandine PERRIN authored 6 years ago
  
  18d3246a
Nov 05, 2018
- merge dev to master · cd57c410
  Amandine PERRIN authored 6 years ago
  
  cd57c410
Aug 28, 2018
- change modes · e87e2a3f
  Amandine PERRIN authored 6 years ago
  
  e87e2a3f
Jan 18, 2018
- Remove readme examples. Better to use the one in doc · 53be6eac
  Amandine PERRIN authored 7 years ago
  
  53be6eac
Oct 06, 2017
- Update documentation with creation of 'gff3' output folder · b22fb2cd
  Amandine PERRIN authored 7 years ago
  
  b22fb2cd
Aug 11, 2017
- Remove input files not needed anymore · 21da9631
  Amandine PERRIN authored 7 years ago
  
  21da9631
Jul 28, 2017
- Add tree subcommand to readme examples · a1aef62e
  Amandine PERRIN authored 7 years ago
  
  a1aef62e
- Add tree part in Readme examples · 5cec4f60
  Amandine PERRIN authored 7 years ago
  
  5cec4f60
Jul 13, 2017
- Add align part in readme example · 0ef0cae0
  Amandine PERRIN authored 8 years ago
  
  0ef0cae0
Jun 28, 2017
- Add corepers part in REAMDE-examples, as well as input files for pangenome and corepers subcommands · 5cbfa2fd
  Amandine PERRIN authored 8 years ago
  
  5cbfa2fd
- Complete readme pangenome with pan_quali/quanti/summary · e540ac82
  Amandine PERRIN authored 8 years ago
  
  e540ac82