Commits · faaee1ca51ad81dff76c44276f32577aee223864 · Amandine PERRIN / panacota

Jan 31, 2023
- genome name cannot have more than 3 '.' separated fields · faaee1ca
  Amandine PERRIN authored 2 years ago
  
  faaee1ca
Oct 05, 2021
- change tab to space between rep name and info in Replicons directory · ea85c66d
  Amandine PERRIN authored 3 years ago
  
  ea85c66d
Mar 08, 2021
- add function for progressbar in thread · e9fc8d8f
  Amandine PERRIN authored 4 years ago
  
  e9fc8d8f
Mar 05, 2021
- more precise docstring · affbee5e
  Amandine PERRIN authored 4 years ago
  
  affbee5e
Jan 29, 2021
- change message when 'run_cmd' fails, and adapt tests · ca2be502
  Amandine PERRIN authored 4 years ago
  
  ca2be502
- modify error message when cmd fails · c9b9337a
  Amandine PERRIN authored 4 years ago
  
  c9b9337a
Oct 22, 2020
- complete util functions · 89a7186b
  Amandine PERRIN authored 4 years ago
  
  89a7186b
Oct 17, 2020
- finish functional tests for prepare module · 7f6e642f
  Amandine PERRIN authored 4 years ago
  
  7f6e642f
Sep 29, 2020
- Add tests for prodigal formatting · 0219b38d
  Amandine PERRIN authored 4 years ago
  
  0219b38d
Sep 14, 2020
- Test for generation of new contig names -> corrected error in logs · 8cdec6cf
  Amandine PERRIN authored 4 years ago
  
  8cdec6cf
- remove functions duplicated · 6b873c39
  Amandine PERRIN authored 4 years ago
  
  6b873c39
Sep 11, 2020
- Add functional tests for annotate module · 37f15ccd
  Amandine PERRIN authored 4 years ago
  
  37f15ccd
Sep 04, 2020
- Main functional test for annotate module · 685a987f
  Amandine PERRIN authored 4 years ago
  
  685a987f
Sep 02, 2020
- add licence header for util functions · 7983cef0
  Amandine PERRIN authored 4 years ago
  
  7983cef0
Aug 24, 2020
- end of tests for format_prodigal functions · 116db29a
  Amandine PERRIN authored 4 years ago
  
  116db29a
Aug 22, 2020
- get_contigs returned in the wrong way · 24e6d5d5
  Amandine PERRIN authored 4 years ago
  
  24e6d5d5
Aug 19, 2020
- update docstring · 6c44b041
  Amandine PERRIN authored 4 years ago
  
  6c44b041
- rename contigs now returns dicts instead of lists · 77a5fe8f
  Amandine PERRIN authored 4 years ago
  
  77a5fe8f
Jul 17, 2020
- Tests for utils.py updated · 1895a6c6
  Amandine PERRIN authored 4 years ago
  
  1895a6c6
Jul 02, 2020
- better logs · 1c5a5a58
  Amandine PERRIN authored 5 years ago
  
  1c5a5a58
Dec 05, 2019
- Write absolute path for annotate_path in LSTINFO file · 23333d25
  Amandine PERRIN authored 5 years ago
  
  23333d25
- Only add logger name in .log.debug file · 84bf0b9b
  Amandine PERRIN authored 5 years ago
  
  84bf0b9b
Dec 04, 2019
- Improve logfiles · 4ebeaa84
  Amandine PERRIN authored 5 years ago
  
  4ebeaa84
Nov 28, 2019
- Solve logger issue for plot_distr functions · e4c4f89b
  Amandine PERRIN authored 5 years ago
  
  e4c4f89b
Nov 12, 2019
- Update docstring for utils functions · f8547838
  Amandine PERRIN authored 5 years ago
  
  f8547838
Nov 05, 2019
- Docstring in utils module · c6b09d70
  Amandine PERRIN authored 5 years ago
  
  c6b09d70
Oct 28, 2019
- begining of tests for genome_seq_functions · 4ac900e2
  Amandine PERRIN authored 5 years ago
  
  4ac900e2
Oct 10, 2019
- Complete docstring on parameter types · 09f9e758
  Amandine PERRIN authored 5 years ago
  
  09f9e758
Oct 08, 2019
- Change output filename when QC only · 9123655f
  Amandine PERRIN authored 5 years ago
  
  9123655f
Sep 12, 2019
- Possibility to change separator in list_to_str · c82d537b
  Amandine PERRIN authored 5 years ago
  
  c82d537b
Sep 09, 2019
- Exit code 1 instead of -1 · b3c5b0bd
  Amandine PERRIN authored 5 years ago
  
  b3c5b0bd
Sep 05, 2019
- prepare module working · c29a701d
  Amandine PERRIN authored 5 years ago
  c29a701d
Sep 03, 2019
- Add utility functions · 677d3542
  Amandine PERRIN authored 5 years ago
  677d3542
Aug 29, 2019
- Add colors to logs in stdout/stderr · dbaca83c
  Amandine PERRIN authored 5 years ago
  
  dbaca83c
- Do not propagate loggers · 6278862b
  Amandine PERRIN authored 5 years ago
  6278862b
- Update verbosity · 283d4177
  Amandine PERRIN authored 5 years ago
  283d4177
Aug 20, 2019
- Format prokka from any sequence (not formatted) OK · 3e044f6e
  Amandine PERRIN authored 5 years ago
  
  3e044f6e
Aug 19, 2019
- Start fixing bug when prokka annotation from a non formatted sequence (for... · 09b55554
  Amandine PERRIN authored 5 years ago
  09b55554
Aug 06, 2019
- Better read of --info file · 8f5018d6
  Amandine PERRIN authored 5 years ago
  8f5018d6
Aug 05, 2019
- new convention for lstinfo files · b8d9a379
  Amandine PERRIN authored 5 years ago
  
  b8d9a379