Commits · v1.1.0 · Amandine PERRIN / panacota · GitLab

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Nov 09, 2020
- v1.1.0 · 215f9199
  Amandine PERRIN authored 4 years ago
  
  View commits for tag v1.1.0 v1.1.0
  
  215f9199
- adapt functional tests to new default iqtree · de2ddde0
  Amandine PERRIN authored 4 years ago
  
  de2ddde0
- adapt functional tests to new default iqtree · be66d01a
  Amandine PERRIN authored 4 years ago
  
  be66d01a
- Default is iqtree2. if iqtree1, specify it · 89030f8e
  Amandine PERRIN authored 4 years ago
  
  89030f8e
- remove debug print · bfa2f9d8
  Amandine PERRIN authored 4 years ago
  
  bfa2f9d8
- check that genomes to analyse are not binary files · bd888470
  Amandine PERRIN authored 4 years ago
  
  bd888470
Nov 06, 2020
- annotate: give lstinfo OR infofile · 88342ef1
  Amandine PERRIN authored 4 years ago
  
  88342ef1
- install fixed version of blast+: 2.10.1 · af2a69f1
  Amandine PERRIN authored 4 years ago
  
  af2a69f1
- warning if no species name nor output directory given · 8eba8172
  Amandine PERRIN authored 4 years ago
  
  8eba8172
- add conda badge (not yet available) · e5d5ed50
  Amandine PERRIN authored 4 years ago
  
  e5d5ed50
- Complete installation instructions · f11f74c6
  Amandine PERRIN authored 4 years ago
  
  f11f74c6
- Complete installation instructions · 6746a11e
  Amandine PERRIN authored 4 years ago
  
  6746a11e
- Complete installation instructions · 612b61d0
  Amandine PERRIN authored 4 years ago
  
  612b61d0
- Complete installation instructions · 5c57768c
  Amandine PERRIN authored 4 years ago
  
  5c57768c
- Add conda installation · 934f5bdf
  Amandine PERRIN authored 4 years ago
  
  934f5bdf
Nov 05, 2020
- complete init for bin folder · 1a846cc2
  Amandine PERRIN authored 4 years ago
  
  1a846cc2
Nov 04, 2020
- Merge branch 'master' into dev · 146603bc
  Amandine PERRIN authored 4 years ago
  
  146603bc
- Check uniqueness of contig names in prepare module · f0c6c841
  Amandine PERRIN authored 4 years ago
  
  f0c6c841
Nov 03, 2020
- Merge branch 'dev' of gitlab.pasteur.fr:aperrin/pipeline_annotation into dev · 83d961bc
  Amandine PERRIN authored 4 years ago
  
  83d961bc
- install softwares in install-dir instead of /tmp · bd5845b1
  Amandine PERRIN authored 4 years ago
  
  bd5845b1
- update pip package · fff84538
  Amandine PERRIN authored 4 years ago
  
  fff84538
- Add licence files to sdist · 00d216e9
  Amandine PERRIN authored 4 years ago
  
  00d216e9
Oct 29, 2020
- Merge branch 'master' of github.com:gem-pasteur/PanACoTA · 45c0f844
  Amandine PERRIN authored 4 years ago
  
  45c0f844
- Merge branch 'master' of gitlab.pasteur.fr:aperrin/pipeline_annotation · 17d16fa8
  Amandine PERRIN authored 4 years ago
  
  17d16fa8
- Add info for singularity run · d02ff28e
  Amandine PERRIN authored 4 years ago
  
  d02ff28e
Oct 28, 2020
- rebuild singularity image · f68e5055
  Amandine PERRIN authored 4 years ago
  
  f68e5055
- re-build singularity image · 7cf69203
  Amandine PERRIN authored 4 years ago
  
  7cf69203
- Merge branch 'master' into dev · 933171ff
  Amandine PERRIN authored 4 years ago
  
  933171ff
- re-build singularity image · 913ac8e1
  Amandine PERRIN authored 4 years ago
  
  913ac8e1
Oct 26, 2020
- Merge branch 'documentation' into module_all · 5a6a6372
  Amandine PERRIN authored 4 years ago
  
  5a6a6372
- Update documentation · 1a8d5981
  Amandine PERRIN authored 4 years ago
  
  1a8d5981
- Merge branch 'master' into documentation · ea19d523
  Amandine PERRIN authored 4 years ago
  
  ea19d523
- change wording · a9f57913
  Amandine PERRIN authored 4 years ago
  
  a9f57913
- rename all_modules -> all · 1279a1f9
  Amandine PERRIN authored 4 years ago
  
  1279a1f9
Oct 23, 2020
- Func test tree module when not verbose · 9e67ecf8
  Amandine PERRIN authored 4 years ago
  
  9e67ecf8
- add func tests for tree module · 6d9d6899
  Amandine PERRIN authored 4 years ago
  
  6d9d6899
- change order of tests in CI · db7c991f
  Amandine PERRIN authored 4 years ago
  
  db7c991f
Oct 22, 2020
- add run tree module to all_modules · 47076e6b
  Amandine PERRIN authored 4 years ago
  
  47076e6b
- Trying to check args when running all modules · df7c68bc
  Amandine PERRIN authored 4 years ago
  
  df7c68bc
- update functional tests to run · 0d696b5e
  Amandine PERRIN authored 4 years ago
  
  0d696b5e