Simpler dependencies.

b0f9dc00 · Blaise Li · 9d8662b0 · b0f9dc00 · b0f9dc00
Commit b0f9dc00 authored 4 years ago by Blaise Li
--- a/requirements.txt
+++ b/requirements.txt
 Cython
-libworkflows @ git+https://bioinfo_utils:tfuTQsSZWMtC5xXJNFJh@gitlab.pasteur.fr/bli/libworkflows.git
+libworkflows @ git+https://gitlab.pasteur.fr/bli/libworkflows.git
 matplotlib
 networkx
 numpy
 pandas
 pyBigWig
 # pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize"
-pybedtools @ git+https://github.com/blaiseli/pybedtools.git@pep518
+# pybedtools @ git+https://github.com/blaiseli/pybedtools.git@pep518
-# pybedtools
+pybedtools
 # scipy<=1.3.3
 scipy>=1.4.2
 seaborn
--- a/setup.py
+++ b/setup.py
@@ -38,14 +38,15 @@ setup(
    install_requires=[
        #"libworkflows @ git+https://gitlab+deploy-token-31:isEzpsgbNf2sJMdUDy2g@gitlab.pasteur.fr/bli/libworkflows.git@744dd79b579577cb6e131653260d7990946be3ad#egg=libworkflows-0.1",
        #"libworkflows @ git+https://gitlab+deploy-token-31:isEzpsgbNf2sJMdUDy2g@gitlab.pasteur.fr/bli/libworkflows.git#egg=libworkflows-0.1",
-        "libworkflows @ git+https://gitlab+deploy-token-31:isEzpsgbNf2sJMdUDy2g@gitlab.pasteur.fr/bli/libworkflows.git",
+        #"libworkflows @ git+https://gitlab+deploy-token-31:isEzpsgbNf2sJMdUDy2g@gitlab.pasteur.fr/bli/libworkflows.git",
+        "libworkflows @ git+https://gitlab.pasteur.fr/bli/libworkflows.git",
        "matplotlib",
        "networkx",
        "numpy",
        "pandas",
        "pyBigWig",
-        "pybedtools @ git+https://github.com/blaiseli/pybedtools.git@pep518",
+        # "pybedtools @ git+https://github.com/blaiseli/pybedtools.git@pep518",
-        # "pybedtools",
+        "pybedtools",
        # "scipy<=1.3.3",
        "scipy>=1.4.2",
        "seaborn"],