Django based project to build metagenomics genes catalog
Blast approach is aimed to annotate a metagenomic sequencing using an approach mostly based on blast.
Django Data Import Utilities
Parameter inference using filtered linear noise approximation algorithm for likelihood calculation.
A module handling basic fonctionnality needed in django project such as base.html using bootstrap, account settings, preferences management, ...
From experiences acquired developing https://gitlab.pasteur.fr/metagenomics/metagenedb, create a light version of it with FastAPI as a backend and SQLModel as ORM
A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium
Converting Genbank files into EMBL-like files suitable for submission to ENA
This will contain the minimal necessary codes to reproduce the image analysis (BF and IF) from the preprint https://arxiv.org/abs/2303.17522