Explore projects

nanopore de novo assembly

Quality-aware fastq demultiplexer. The goal is to demultiplex fastq files where the barcode is contained in the read at a known position.

Smith-Waterman-based Average Nucleotide Identity

Pipeline to run CMS in large-scale analyses

docker image to build tensorflow on CentOS-6 x86_64

import from github

Preprocessing FASTQ files

Fast distance-based phylogenetic inference from unaligned genome sequences

You can find here the scripts corresponding to this paper: "A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach"

Real-time visualization of multiplex syndromic PCR panel sequencing for rapid pathogens detection

https://bbrancot.pages.pasteur.fr/prog-web-client-server/

creating figures showing overall similarity between genomes

Finding Repeats Using BLAST

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass