Explore projects

Extracting CDS from contig sequences

This repository contains all the scripts used for the development of core genome MLST schemes for Klebsiella pneumoniae sensu stricto and two of its sublineages SL147 and SL307.

Real-time visualization of multiplex syndromic PCR panel sequencing for rapid pathogens detection

Pasteur Course on Integrative Structural Biology 2018

Bioinformatics and Genome Analyses 2017 - http://meetings.embo.org/event/17-genome

Previous events: http://webext.pasteur.fr/tekaia/BGA_courses.html

ID-based RAG FastAPI: Integration with Langchain and PostgreSQL/pgvector

nanopore de novo assembly

This package contains deep learning models and related scripts for RoseTTAFold

Restriction-modification scripts and profiles by Pedro Oliveira

This project contains the latest PhageTerm software source repository (multi machine version).

Indexing of trx.mat files into SQLite DB

creating figures showing overall similarity between genomes