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This repository contains all the scripts used for the development of core genome MLST schemes for Klebsiella pneumoniae sensu stricto and two of its sublineages SL147 and SL307.

my . * files

Système de Traitement des Recrutements Automatisé et Super Simplifié

This package contains deep learning models and related scripts for RoseTTAFold

Bioinformatics and Genome Analyses 2017 - http://meetings.embo.org/event/17-genome

Previous events: http://webext.pasteur.fr/tekaia/BGA_courses.html

Pipeline to run CMS in large-scale analyses

EMBO Course on Integrative Structural Biology 2019 http://meetings.embo.org/event/19-structural-biology

Restriction-modification scripts and profiles by Pedro Oliveira

This project contains the latest PhageTerm software source repository (multi machine version).

Some helpers for my HTS snakemake workflows.

creating figures showing overall similarity between genomes