Explore projects

Smith-Waterman-based Average Nucleotide Identity

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass

Maestro Cluster documentation

Pipeline to run CMS in large-scale analyses

Some helpers to call DESeq2 using rpy2 in python.

scripts to prepare gwas data for using PAINTOR (https://github.com/gkichaev/PAINTOR_V3.0)

LIANA: a LIgand-receptor ANalysis frAmework

Trying to deconvolve single tag assignment for multiple molecules

Quality-aware fastq demultiplexer. The goal is to demultiplex fastq files where the barcode is contained in the read at a known position.