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Icy is an open community platform for bioimage informatics

HUB transcriptomic snakemake pipeline

scientific python course given in 2021

Compute RNA expression around a reference position

Find characters shared by a group of aligned sequences

Some scripts to plot results from my HTS pipelines.

Downloading FASTQ files from ENA

Fast distance-based phylogenetic inference from unaligned genome sequences

You can find here the scripts corresponding to this paper: "A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach"

Pipeline to run CMS in large-scale analyses

Fast greedy clustering of genomes based on minhash similarity