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Fast greedy clustering of genomes based on minhash similarity

Genome de novo assembly from raw paired-end FASTQ files

Data visualization protocols, mostly using R

Extracting CDS from contig sequences

Data and code of the article Rasoamalala et al. "Unraveling the role of rat and flea population dynamics on the seasonality of plague epidemics in Madagascar", Proceedings of the National Academy of Sciences (2025).

Download the latest PDF version of my CV here.

Creates convex versions of regions of interests in 2D or 3D using the QuickHull library.