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ROI Inclusion Analysis plugin for Icy.

This plugin is designed to manipulate binary masks over images. It contains all the basic tools to manage such objects.

Provides 3D vector mathematics classes.

Intensity projection plugin. It does intensity project along depth or time with multiple algorithms: mean, max, median, variance, standard deviation, saturated sum. Projection can also be restricted to ROI.

This Icy plugin allows to compute and display the histogram of a sequence, with a more accurate control on the histogram parameters. It also enables the computation of histograms on ROIs.

Low-level library for reading and writing Matlab .mat files

Shiny version of coGSEA

Embed CPython in Java through JNI

Google FlatBuffers library for Icy https://github.com/google/flatbuffers

Use Icy as an image viewer from Matlab

Miscellaneous python things to deal with bam files