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Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.

Blocks plugin for Icy. Also known as "Protocols SDK" This plugin provide interfaces to make plugin compatible with Protocols(Graphical Programming).

This project contains icy utilitary var classes to help protocol creation.

Block Mapping and Gathering with Entropy

Translating and back-translating codon and amino-acid sequence files

A Fiji tool to detect, track and analyze cell-to-cell contacts.

First reported in Samassa et al., 2020, "Shigella impairs human T lymphocyte responsiveness by hijacking actin cytoskeleton dynamics and TCR vesicular trafficking"

Clipper - A polygon clipping library

Display the colormap over the image using an overlay.

Image segmentation by representative colors selection. Two versions are available : – thresholding – positive and negative colors selection and SVM learning

Building a supermatrix of characters from a set of multiple sequence alignments

This plugin extracts groups of connected pixels in 2D and 3D based on their intensity and that of the background. Works on both binary and gray-scale data. Output can be pushed to the swimming pool for other plug-ins to further exploi

Creates convex versions of regions of interests in 2D or 3D using the QuickHull library.

This Icy bioimage analysis plugin was developped to help biologists detect late cytokinetic bridges on static immunofluorescence images.

DeepLearning4J library for Icy. Website: https://deeplearning4j.konduit.ai/ Github: https://github.com/eclipse/deeplearning4j