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Fast removal of contaminating reads from FASTQ file(s)

Cropping reads to reach homogeneous composition among positions

Estimating standard descriptive statistics from FASTQ file

Estimating standard descriptive statistics from FASTQ files

Downloading FASTQ files from ENA

FASTQ summary

Inferring alien oligonucleotides (adapter, primer, index, barcode, ...) without any prior or external knowledge

Assembling SSU

Genome de novo assembly from raw paired-end FASTQ files

mini-contig de novo assembly from long-read data

nanopore de novo assembly