Commits · e161aa07f0955386fd3b743a0d2cb7cb5969ecec · hub / MeRIPSeq · GitLab

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Apr 23, 2019
- Add cutoff on fasta size · e161aa07
  christophebecavin authored 5 years ago
  
  e161aa07
- Add cutoff on fasta size · 5883b2f7
  christophebecavin authored 5 years ago
  
  5883b2f7
- Add motif scripts · 8141efa4
  christophebecavin authored 5 years ago
  
  8141efa4
- Big Commit before publication · f797c9eb
  Christophe BECAVIN authored 5 years ago
  
  f797c9eb
Jan 10, 2019
- Add search for hyper and hypo diff methyl sites · e7701f9e
  Christophe BECAVIN authored 6 years ago
  
  e7701f9e
Dec 29, 2018
- Create RunSlurmExample.sh · f3355b10
  Christophe BECAVIN authored 6 years ago
  
  f3355b10
Dec 28, 2018
- Update diff_meth.R by removing RNA_IP management · fbe7f857
  Christophe BECAVIN authored 6 years ago
  
  fbe7f857
- Clean motif occurence search · 9e26d933
  Christophe BECAVIN authored 6 years ago
  
  9e26d933
- Remove loading of IP datasest for transcriptomics - diffmethyl.R · 06852766
  Christophe BECAVIN authored 6 years ago
  
  06852766
- Remove loading of IP datasest for transcriptomics - diffmethyl.R · 1dc37f73
  Christophe BECAVIN authored 6 years ago
  
  1dc37f73
- Modify RunMapping.sh · 1eecf58e
  Christophe BECAVIN authored 6 years ago
  
  1eecf58e
Dec 27, 2018
- move find_peak_center to find_peak_max · 52c03560
  Christophe BECAVIN authored 6 years ago
  
  52c03560
- Modify motif occurence search · adda2a09
  Christophe BECAVIN authored 6 years ago
  
  adda2a09
- Cleaning whole repository - putting deprecated files in separated folder -... · 0f80bb21
  Christophe BECAVIN authored 6 years ago
```
Cleaning whole repository - putting deprecated files in separated folder - Modifying diff_methyl.R for saving in RData
```
  0f80bb21
- Modify Bash slurm script - remove array parameter · d344b1b1
  Christophe BECAVIN authored 6 years ago
  
  d344b1b1
Dec 26, 2018
- Bash slurm · c7ac762d
  Christophe BECAVIN authored 6 years ago
  
  c7ac762d
- Motif analysis + tss analysis · 682b8ef9
  Christophe BECAVIN authored 6 years ago
  
  682b8ef9
- Motif search update · 98668cf7
  Christophe BECAVIN authored 6 years ago
  
  98668cf7
Dec 17, 2018
- Motif search improvement · ce98a211
  Christophe BECAVIN authored 6 years ago
  
  ce98a211
Dec 12, 2018
- Update R on server · b1321125
  Christophe BECAVIN authored 6 years ago
  
  b1321125
- Parse motif modified · 5b3d10a3
  Christophe BECAVIN authored 6 years ago
  
  5b3d10a3
Dec 06, 2018
- Big update: Add all scripts for Slurm · 364e6afc
  Christophe BECAVIN authored 6 years ago
  
  364e6afc
- Add old python files before cleaning the whole workflow · a98fbcca
  Christophe BECAVIN authored 6 years ago
  
  a98fbcca
- Add local files for motif analysis · 925d5b4d
  Christophe BECAVIN authored 6 years ago
  
  925d5b4d
- Big update : Cleaning repository · 46dfee14
  Christophe BECAVIN authored 6 years ago
  
  46dfee14
- Big update : Add Rpackage, Add peak max coverage, Add mean coverage calc, Add... · ab0e30ef
  Christophe BECAVIN authored 6 years ago
```
Big update : Add Rpackage, Add peak max coverage, Add mean coverage calc, Add Tars scripts, Optimize whole workflow
```
  ab0e30ef
Jul 17, 2018
- add Guitar · dbc973de
  Christophe BECAVIN authored 6 years ago
  
  dbc973de
Jul 03, 2018
- Add R script · 28481998
  Christophe BECAVIN authored 6 years ago
  
  28481998
Jun 21, 2018
- Update python and bash · 3e220c35
  Christophe BECAVIN authored 6 years ago
  
  3e220c35
- Update python and bash · 021a0d68
  Christophe BECAVIN authored 6 years ago
  
  021a0d68
- Update python and bash · f8b81d83
  Christophe BECAVIN authored 6 years ago
  
  f8b81d83
- New scripts · df40d879
  Christophe BECAVIN authored 6 years ago
  
  df40d879
Mar 09, 2018
- V1.0 · 93d0c8b0
  Christophe BECAVIN authored 7 years ago
  
  93d0c8b0
- V1.0 · a7bd3aed
  Christophe BECAVIN authored 7 years ago
  
  a7bd3aed
Mar 08, 2018
- R scripts · 586e7097
  Christophe BECAVIN authored 7 years ago
  
  586e7097
- R scripts · 76fdf5c7
  Christophe BECAVIN authored 7 years ago
  
  76fdf5c7
Mar 02, 2018
- regroup · 05fcabd5
  Christophe BECAVIN authored 7 years ago
  
  05fcabd5
- Annotation · 51ee2548
  Christophe BECAVIN authored 7 years ago
  
  51ee2548
Mar 01, 2018
- peak detection · ab90d401
  Christophe BECAVIN authored 7 years ago
  
  ab90d401
- peak detect · 739bd3a3
  Christophe BECAVIN authored 7 years ago
  
  739bd3a3