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linked reads molecule ordering
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Yoann DUFRESNE
linked reads molecule ordering
Commits
cd20dda3
Commit
cd20dda3
authored
May 25, 2020
by
Yoann Dufresne
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0c032479
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.gitignore
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snake_exec/CMD_acc_sens
snake_exec/CMD_acc_sens
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snake_exec/CMD_table_evaluate
snake_exec/CMD_table_evaluate
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.gitignore
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cd20dda3
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@@ -3,8 +3,10 @@ real_data/
art/
**/__pycache__/
*.pyc
*.egg-info/
.pytest_cache/
.idea/
.snakemake/
snake_tests/
**/*.tmp
**/snake_*
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#!/bin/bash
python3 ../deconvolution/main/to_d2_graph.py simu_0_bar_n
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mv
d2_graph.gexf simu_0_bar_n
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python ../deconvolution/main/d2_reduction.py
--output_d2_name
simu_0_bar_n
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.gexf.d2_graph_reduced.gexf simu_0_bar_n
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.gexf simu_0_bar_n
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$dev
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.gexf.d2_graph.gexf 2>&1
>
/dev/null
echo
"Gb
$n
$d
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$dev
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python ../deconvolution/main/d2_random_path_evaluation.py simu_0_bar_n
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echo
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python ../deconvolution/main/d2_random_path_evaluation.py simu_0_bar_n
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0c032479
#!/bin/bash
python3 ../deconvolution/main/to_d2_graph.py simu_0_bar_n
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$n
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_d
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$d
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_m
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$m
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-dev
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$dev
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.gexf
mv
d2_graph.gexf simu_0_bar_n
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_d
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$d
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_m
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$m
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-dev
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$dev
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.gexf.d2_graph.gexf
python ../deconvolution/main/d2_reduction.py
--output_d2_name
simu_0_bar_n
"
$n
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_d
"
$d
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_m
"
$m
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$dev
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.gexf.d2_graph_reduced.gexf simu_0_bar_n
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python ../deconvolution/main/d2_to_path_simple.py simu_0_bar_n
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python ../deconvolution/main/evaluate.py
--type
path
--barcode_graph
simu_0_bar_n
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.gexf.d2_graph_reduced_path.gexf
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