Commit cd20dda3 authored by Yoann Dufresne's avatar Yoann Dufresne

clean repository

parent 0c032479
......@@ -3,8 +3,10 @@ real_data/
art/
**/__pycache__/
*.pyc
*.egg-info/
.pytest_cache/
.idea/
.snakemake/
snake_tests/
**/*.tmp
**/snake_*
#!/bin/bash
python3 ../deconvolution/main/to_d2_graph.py simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf >/dev/null 2>&1
mv d2_graph.gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph.gexf
python ../deconvolution/main/d2_reduction.py --output_d2_name simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph_reduced.gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph.gexf 2>&1 >/dev/null
echo "Gb $n $d $m $dev"
python ../deconvolution/main/d2_random_path_evaluation.py simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf $n-$d-$dev Gb
echo "Lcp $n $d $m $dev"
python ../deconvolution/main/d2_random_path_evaluation.py simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph_reduced.gexf $n-$d-$dev Lcp
#!/bin/bash
python3 ../deconvolution/main/to_d2_graph.py simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf
mv d2_graph.gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph.gexf
python ../deconvolution/main/d2_reduction.py --output_d2_name simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph_reduced.gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph.gexf
python ../deconvolution/main/d2_to_path_simple.py simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph_reduced.gexf
python ../deconvolution/main/evaluate.py --type path --barcode_graph simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph_reduced_path.gexf
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