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Yoann DUFRESNE
linked reads molecule ordering
Commits
cd20dda3
Commit
cd20dda3
authored
May 25, 2020
by
Yoann Dufresne
Browse files
clean repository
parent
0c032479
Changes
3
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.gitignore
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cd20dda3
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@@ -3,8 +3,10 @@ real_data/
art/
**/__pycache__/
*.pyc
*.egg-info/
.pytest_cache/
.idea/
.snakemake/
snake_tests/
**/*.tmp
**/snake_*
snake_exec/CMD_acc_sens
deleted
100644 → 0
View file @
0c032479
#!/bin/bash
python3 ../deconvolution/main/to_d2_graph.py simu_0_bar_n
"
$n
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_d
"
$d
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_m
"
$m
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-dev
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$dev
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.gexf
>
/dev/null 2>&1
mv
d2_graph.gexf simu_0_bar_n
"
$n
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_d
"
$d
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_m
"
$m
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-dev
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$dev
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.gexf.d2_graph.gexf
python ../deconvolution/main/d2_reduction.py
--output_d2_name
simu_0_bar_n
"
$n
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_d
"
$d
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_m
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$m
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-dev
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$dev
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.gexf.d2_graph_reduced.gexf simu_0_bar_n
"
$n
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_d
"
$d
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_m
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$m
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-dev
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$dev
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.gexf simu_0_bar_n
"
$n
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_d
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$d
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_m
"
$m
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-dev
"
$dev
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.gexf.d2_graph.gexf 2>&1
>
/dev/null
echo
"Gb
$n
$d
$m
$dev
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python ../deconvolution/main/d2_random_path_evaluation.py simu_0_bar_n
"
$n
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_d
"
$d
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_m
"
$m
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-dev
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$dev
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.gexf
$n
-
$d
-
$dev
Gb
echo
"Lcp
$n
$d
$m
$dev
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python ../deconvolution/main/d2_random_path_evaluation.py simu_0_bar_n
"
$n
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_d
"
$d
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_m
"
$m
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-dev
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$dev
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.gexf.d2_graph_reduced.gexf
$n
-
$d
-
$dev
Lcp
snake_exec/CMD_table_evaluate
deleted
100644 → 0
View file @
0c032479
#!/bin/bash
python3 ../deconvolution/main/to_d2_graph.py simu_0_bar_n
"
$n
"
_d
"
$d
"
_m
"
$m
"
-dev
"
$dev
"
.gexf
mv
d2_graph.gexf simu_0_bar_n
"
$n
"
_d
"
$d
"
_m
"
$m
"
-dev
"
$dev
"
.gexf.d2_graph.gexf
python ../deconvolution/main/d2_reduction.py
--output_d2_name
simu_0_bar_n
"
$n
"
_d
"
$d
"
_m
"
$m
"
-dev
"
$dev
"
.gexf.d2_graph_reduced.gexf simu_0_bar_n
"
$n
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_d
"
$d
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_m
"
$m
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-dev
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$dev
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.gexf simu_0_bar_n
"
$n
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_d
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$d
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_m
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$m
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-dev
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$dev
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.gexf.d2_graph.gexf
python ../deconvolution/main/d2_to_path_simple.py simu_0_bar_n
"
$n
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_d
"
$d
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_m
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$m
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-dev
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$dev
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.gexf simu_0_bar_n
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$n
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_d
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$d
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_m
"
$m
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-dev
"
$dev
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.gexf.d2_graph_reduced.gexf
python ../deconvolution/main/evaluate.py
--type
path
--barcode_graph
simu_0_bar_n
"
$n
"
_d
"
$d
"
_m
"
$m
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-dev
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$dev
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.gexf simu_0_bar_n
"
$n
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_d
"
$d
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_m
"
$m
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-dev
"
$dev
"
.gexf.d2_graph_reduced_path.gexf
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