clean repository

.gitignore

@@ -3,8 +3,10 @@ real_data/
 art/
 **/__pycache__/
 *.pyc
+*.egg-info/
 .pytest_cache/
 .idea/
 .snakemake/
 snake_tests/
 **/*.tmp
+**/snake_*

snake_exec/CMD_acc_sens

-#!/bin/bash
-python3 ../deconvolution/main/to_d2_graph.py simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf >/dev/null 2>&1
-mv d2_graph.gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph.gexf
-
-python ../deconvolution/main/d2_reduction.py  --output_d2_name simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph_reduced.gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph.gexf  2>&1 >/dev/null
-
-
-echo "Gb $n $d $m $dev"
-python ../deconvolution/main/d2_random_path_evaluation.py simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf $n-$d-$dev Gb 
-echo "Lcp $n $d $m $dev"
-python ../deconvolution/main/d2_random_path_evaluation.py simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph_reduced.gexf $n-$d-$dev Lcp

snake_exec/CMD_table_evaluate

-#!/bin/bash
-python3 ../deconvolution/main/to_d2_graph.py simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf
-mv d2_graph.gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph.gexf
-
-python ../deconvolution/main/d2_reduction.py  --output_d2_name simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph_reduced.gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph.gexf  
-
-python ../deconvolution/main/d2_to_path_simple.py simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph_reduced.gexf
-
-python ../deconvolution/main/evaluate.py --type path --barcode_graph simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph_reduced_path.gexf