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Commit 0906153c authored by Blaise Li's avatar Blaise Li
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Fix makefile. Symbolic link update was wrong.

parent 8ddf5ca7
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with 3 additions and 4 deletions
singularity/Makefile
+ 3
− 4
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...@@ -4,8 +4,9 @@ ifeq ($(PREFIX),) ...@@ -4,8 +4,9 @@ ifeq ($(PREFIX),)
PREFIX := /opt/bioinfo_utils PREFIX := /opt/bioinfo_utils
endif endif
all: run_pipeline
install: all install: run_pipeline
install -d $(PREFIX)_$(VERSION)/bin install -d $(PREFIX)_$(VERSION)/bin
install run_pipeline $(PREFIX)_$(VERSION)/bin/. install run_pipeline $(PREFIX)_$(VERSION)/bin/.
install run_pipeline.sh $(PREFIX)_$(VERSION)/bin/. install run_pipeline.sh $(PREFIX)_$(VERSION)/bin/.
...@@ -13,9 +14,7 @@ install: all ...@@ -13,9 +14,7 @@ install: all
do \ do \
ln -sf $(PREFIX)_$(VERSION)/bin/run_pipeline.sh $(PREFIX)_$(VERSION)/bin/run_$${datatype}_pipeline; \ ln -sf $(PREFIX)_$(VERSION)/bin/run_pipeline.sh $(PREFIX)_$(VERSION)/bin/run_$${datatype}_pipeline; \
done done
ln -sf $(PREFIX)_$(VERSION) $(PREFIX) ln -sfn $(PREFIX)_$(VERSION) $(PREFIX)
all: run_pipeline
# Should depend on the rest of the repository. # Should depend on the rest of the repository.
run_pipeline: run_pipeline.def run_pipeline: run_pipeline.def
......
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