Explore projects

A package for the Joint Analysis of GWAS Summary Statistics.

nanopore de novo assembly

Genome de novo assembly from raw paired-end FASTQ files

http://bbrancot.pages.pasteur.fr/django-course

Preprocessing FASTQ files

Estimating pairwise OGRIs between genomes (ANI, AAI, POCP, ...)

COG annotation of CDS

Estimating standard descriptive statistics from contig sequences

Backbone for automatic tagging backends; includes a Python implementation of PlanarLarvae.jl features and the Julia-Python communication layer

Indexing of trx.mat files into SQLite DB

Fast distance-based phylogenetic inference from unaligned genome sequences

Proxmox PVE.

Learning using it.

sPYce is a since cell and single nucleus ATAC-seq integration method across different species implemented in Python.

https://bbrancot.pages.pasteur.fr/prog-web-client-server/