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The snakeyaml library available for Icy

Evolutionary Contact wrapper for ARIA software

This library contains the functions to convert TensorFlow 1 tensors into Icy sequences and viceversa. This library is compatible with TensorFlow versions up to 1.15

Napari plugin to ease manual correction of epithelial movie segmentation

Unix training, from total beginners to advanced users

Deprojection of a 2D segmentation onto a 2.5D mesh

script that makes a visual representation of a spot containing ICE.

MetroloSPIM plugin for Icy

Tools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.

I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.

Defense Finder is a tool that automatically detect known defense systems in prokaryotic genomes. The Defense Finder Wiki aims at gathering and synthesize scientific knowledge regarding defense systems.

Shiny version of coGSEA

coGSEA

Public copy of gitlab.pasteur.fr/les-larves/maggotuba#light-stable-for-tagging Courtesy of A. Blanc

DeepLearning4J library for Icy. Website: https://deeplearning4j.konduit.ai/ Github: https://github.com/eclipse/deeplearning4j

Low-level functions for interactive communication between Icy and Matlab.

Export sequences from Icy to Matlab *.mat files