fastq

Downloading FASTQ files from ENA

Cropping reads to reach homogeneous composition among positions

Estimating standard descriptive statistics from FASTQ file

Genome de novo assembly from raw paired-end FASTQ files

Estimating standard descriptive statistics from FASTQ files

Fast removal of contaminating reads from FASTQ file(s)

Inferring alien oligonucleotides (adapters, primers, ...) from FASTQ file