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A package for the Joint Analysis of GWAS Summary Statistics.

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass

nanopore de novo assembly

Genome de novo assembly from raw paired-end FASTQ files

Helm 3 charts to deploy a Supabase on Kubernetes

http://bbrancot.pages.pasteur.fr/django-course

Preprocessing FASTQ files

Estimating pairwise OGRIs between genomes (ANI, AAI, POCP, ...)

COG annotation of CDS

Estimating standard descriptive statistics from contig sequences

Système de Traitement des Recrutements Automatisé et Super Simplifié

Real-time visualization of multiplex syndromic PCR panel sequencing for rapid pathogens detection

Backbone for automatic tagging backends; includes a Python implementation of PlanarLarvae.jl features and the Julia-Python communication layer

Indexing of trx.mat files into SQLite DB