- Jan 27, 2016
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Bertrand NÉRON authored
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Bertrand NÉRON authored
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Bertrand NÉRON authored
properly
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- Jan 22, 2016
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Bertrand NÉRON authored
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Bertrand NÉRON authored
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Bertrand NÉRON authored
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Bertrand NÉRON authored
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Bertrand NÉRON authored
in form - add space between ex: and the value in reference to macsyfinder/view provide the 2 url in reference to Txsscan remove text keep only the link
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Bertrand NÉRON authored
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Bertrand NÉRON authored
when the taxonomy ends with '.' or ';' the 'ast char must be removed there was an error, only the last term was assigned to the taxonomy which induce javascript error on the sever side in the by_taxonomy view taxonomy.join(', ') is not a function
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- Jan 21, 2016
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Bertrand NÉRON authored
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Bertrand NÉRON authored
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Bertrand NÉRON authored
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Bertrand NÉRON authored
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Bertrand NÉRON authored
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Bertrand NÉRON authored
when data are not valid a forbiden error is thrown and the message was not clear. know the 2 origin of erro data or credentials are treated separately and an improved message is displayed to the user
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Bertrand NÉRON authored
so skip these systems and log them
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Bertrand NÉRON authored
replace namedtuple SystemInfo by an object as we need to mutate it some information (system_status, and predicted_system are known after the creation of new system occurrence when the parser encounter a gene belonging a system not neighbor genes
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Bertrand NÉRON authored
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Bertrand NÉRON authored
replace schema of T3SS system by schema of all secretion systems and secreton logo of secreton by txssdb logo
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Bertrand NÉRON authored
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Bertrand NÉRON authored
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Bertrand NÉRON authored
instead for only T3SS genes
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- Jan 20, 2016
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Bertrand NÉRON authored
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Bertrand NÉRON authored
ncbi_id
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Bertrand NÉRON authored
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Bertrand NÉRON authored
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Bertrand NÉRON authored
replace all t3ss_family info and search by predicted_system and add info ncbi_id and search system using ncbi_id
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Bertrand NÉRON authored
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- Jan 19, 2016
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Bertrand NÉRON authored
use argparse instead of optparse raise error when system-id is not specify
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Bertrand NÉRON authored
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- Jan 18, 2016
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Bertrand NÉRON authored
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Bertrand NÉRON authored
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Bertrand NÉRON authored
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Bertrand NÉRON authored
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Bertrand NÉRON authored
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Bertrand NÉRON authored
the documents have not any longer fields: gene.full_score gene.evalue gene.best_domain_score gene.best_domain_evalue gene.c_value gene.coverage_profile but there are now new fields: replicon.ncbi_id gene.score gene.i_evalue gene.coverage
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- Jan 14, 2016
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Bertrand NÉRON authored
GEM provide new data with some fields in plus and some have disapear modification of the parser according to these new data
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- Dec 17, 2015
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Bertrand NÉRON authored
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Bertrand NÉRON authored
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