release v8.5.0: Some figures corrected, computations of number of insertions also and the duplicated part is now ok

Version v8.0.0: Operational version for Ecoli. But Warning: still problem when using the option -resume of nextflow run, notably including a wrong figure 38, because of all the code between processes in the main.nf file that are not controled by the cache system

v4.1.0 release: Ok up to plot after attC read selection and attC trimming, tested on full B2699, and debugged