@@ -96,6 +96,7 @@ See JASS documentation for its usage (https://statistical-genetics.pages.pasteur
For this step you will need to install an additional dependency [RAISS](https://gitlab.pasteur.fr/statistical-genetics/raiss) python package.
* --compute_imputation=true : the imputation step will be performed
* --ref_panel : A folder containing a Reference Panel in the .bim, .bed, .fam format for imputation with RAISS
* --ld-folder : A path toward a folder containing LD matrices (that can be generated from the reference panel with the raiss package as described here : http://statistical-genetics.pages.pasteur.fr/raiss/#precomputation-of-ld-correlation)
