Commits · 799c6865f3e09a4abfe3217a719fccc46af7df1c · Yoann DUFRESNE / linked reads molecule ordering

May 19, 2020
- more control over ground truth overlaps; also script for generating figure of... · 799c6865
  Rayan Chikhi authored 5 years ago
  
  more control over ground truth overlaps; also script for generating figure of synthetic accuracy/sens
  799c6865
May 14, 2020
- bugfix verbose arg · 26206cc7
  Yoann Dufresne authored 5 years ago
  
  26206cc7
- verbose · a584b1b9
  Yoann Dufresne authored 5 years ago
  
  a584b1b9
Apr 29, 2020
- main adaptation for threshold · a304859c
  Yoann Dufresne authored 5 years ago
  
  a304859c
Apr 28, 2020
- clique graph tests · 498df34a
  Yoann Dufresne authored 5 years ago
  
  498df34a
Apr 17, 2020
- simplification of d2 construction · 2122230c
  Yoann Dufresne authored 5 years ago
  
  2122230c
Apr 10, 2020
- add debug graph outputing fort mwm · e6072e12
  Yoann Dufresne authored 5 years ago
  
  e6072e12
Feb 17, 2020
- parallelism upgrade for d2 construction · 0ff34ba2
  Yoann Dufresne authored 5 years ago
  
  0ff34ba2
Feb 13, 2020
- bugfix: fake d2 generation due to variable collisions · 59ef6b96
  Yoann Dufresne authored 5 years ago
  
  59ef6b96
Jan 14, 2020
- index and clique modification · 02f87907
  Yoann Dufresne authored 5 years ago
  
  02f87907
Jan 13, 2020
- refactoring of the code to match package tree · f78f16f2
  Yoann Dufresne authored 5 years ago
  
  f78f16f2
Jan 09, 2020
- refactor directories · 5e05d845
  Yoann Dufresne authored 5 years ago
  
  5e05d845
Jan 06, 2020
- d2 simplification and add maxclique community detection as argument · aedced90
  Yoann Dufresne authored 5 years ago
  
  aedced90
Jan 03, 2020
- some of my tests on alternative d_graphs construction techniques · b906f1b9
  rchikhi authored 5 years ago
  
  b906f1b9
Dec 30, 2019
- deconvolution updates · 288449cc
  Yoann Dufresne authored 5 years ago
  
  288449cc
Dec 11, 2019
- some debug info to d2 graph construction · be448d6c
  rchikhi authored 5 years ago
  
  be448d6c
Nov 18, 2019
- Add a Snakemake for data simulation · 9fde8e34
  Yoann Dufresne authored 5 years ago
  
  9fde8e34
Aug 13, 2019
- refactor mains and subgraph definition to be coherent with nx graph heritage · ba61e7d2
  Yoann Dufresne authored 5 years ago
  
  ba61e7d2
Aug 09, 2019
- simple transitive reduction done · c0020617
  Yoann Dufresne authored 5 years ago
  
  c0020617
Aug 07, 2019
- prepare d2 graph to realoding by moving construction steps to annexe functions · d5486b14
  Yoann Dufresne authored 5 years ago
  
  d5486b14
Aug 06, 2019
- refactoring · 0d3dcbf7
  Yoann Dufresne authored 5 years ago
  
  0d3dcbf7