Explore projects

scientific python course given in 2021

HUB transcriptomic snakemake pipeline

Icy is an open community platform for bioimage informatics

Find characters shared by a group of aligned sequences

Downloading FASTQ files from ENA

Compute RNA expression around a reference position

Some experiments with parallel and functional programming.

scripts to prepare gwas data for using PAINTOR (https://github.com/gkichaev/PAINTOR_V3.0)

Estimating Genome Medoid

creating figures showing overall similarity between genomes

Singularity(based on docker://debian) container to run skype

Code and data for the article "Integrating information from historical data into mechanistic models for influenza forecasting" by Alessio Andronico, Juliette Paireau and Simon Cauchemez