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scientific python course given in 2021

HUB transcriptomic snakemake pipeline

Icy is an open community platform for bioimage informatics

Compute RNA expression around a reference position

Find characters shared by a group of aligned sequences

Downloading FASTQ files from ENA

metagenomics pipeline on maestro

Some helpers for my HTS snakemake workflows.

Some helpers for HTS data analyses.

Some helpers to call DESeq2 using rpy2 in python.

Defining small RNAs in C. elegans.

Some scripts to plot results from my HTS pipelines.