Commits · docker · Amandine PERRIN / pipeline_annotation

29 Jan, 2021 1 commit
- install tbl2asn after prokka · 4dcd2774
  Amandine PERRIN authored Jan 29, 2021
  
  4dcd2774
22 Jan, 2021 6 commits
- correct link to fasttreeMP · 169b3e03
  Amandine PERRIN authored Jan 22, 2021
  
  169b3e03
- install tbl2asn before bioperl and hmmer · 26536521
  Amandine PERRIN authored Jan 22, 2021
  
  26536521
- update prokka install for annote_and_1tree docker image · 4368fd32
  Amandine PERRIN authored Jan 22, 2021
  
  4368fd32
- Add tbl2asm installation · 3bf69372
  Amandine PERRIN authored Jan 22, 2021
  
  3bf69372
- Add hmmer installation · 8a98b06f
  Amandine PERRIN authored Jan 22, 2021
  
  8a98b06f
- update prokka installation on ubuntu 20.04 · e0c261ad
  Amandine PERRIN authored Jan 22, 2021
  
  e0c261ad
18 Dec, 2020 7 commits
- remove mafft docker annot-and-quicktree image · d85cb0e6
  Amandine PERRIN authored Dec 18, 2020
  
  d85cb0e6
- barrnap docker image · ba237576
  Amandine PERRIN authored Dec 18, 2020
```
install libxml-simple-perl with non-interactive mode
```
  ba237576
- update prokka installation in docker image · 3d1ad6a1
  Amandine PERRIN authored Dec 18, 2020
```
- need to set 'yes' by default to install libxml-simple-perl library (RUN DEBIAN_FRONTEND="noninteractive" apt install)
- need to install bioperl from cpan (RUN echo yes | cpan Bio::Perl)
```
  3d1ad6a1
- install wget prodigal in image · 97298a7a
  Amandine PERRIN authored Dec 18, 2020
  
  97298a7a
- update all docker images used for tests · 075a0535
  Amandine PERRIN authored Dec 18, 2020
  
  075a0535
- use dsi docker:dind image · a9558439
  Amandine PERRIN authored Dec 18, 2020
  
  a9558439
- new version of docker image for tests: · 15b6fa4d
  Amandine PERRIN authored Dec 18, 2020
```
- prokka with updated tbl2asn binary
- use ubuntu 20.04
```
  15b6fa4d
02 Sep, 2020 3 commits
- registry back · 0ae15a62
  Amandine PERRIN authored Sep 02, 2020
  
  0ae15a62
- type gitlabci · 78ab241a
  Amandine PERRIN authored Sep 02, 2020
  
  78ab241a
- type gitlabci · 390d2789
  Amandine PERRIN authored Sep 02, 2020
  
  390d2789
30 Jul, 2020 3 commits
- back to ubuntu 18.04 · 83ea0e7f
  Amandine PERRIN authored Jul 30, 2020
  
  83ea0e7f
- move to ubuntu 20.04 · bdf5bbdf
  Amandine PERRIN authored Jul 30, 2020
  
  bdf5bbdf
- add prodigal to docker image for tests · 53a1617d
  Amandine PERRIN authored Jul 30, 2020
  
  53a1617d
22 Jul, 2020 5 commits
- regenerate all images · bbba30b4
  Amandine PERRIN authored Jul 22, 2020
  
  bbba30b4
- correction installation iqtree · 305b92d3
  Amandine PERRIN authored Jul 22, 2020
  
  305b92d3
- download new blast+ latest version · e808b1b7
  Amandine PERRIN authored Jul 22, 2020
  
  e808b1b7
- Add installation of iqtree · 0d158e47
  Amandine PERRIN authored Jul 22, 2020
  
  0d158e47
- Add installation of iqtree · 6abe418c
  Amandine PERRIN authored Jul 22, 2020
  
  6abe418c
03 Feb, 2020 4 commits
- remove blastp --version command · abe28251
  Amandine PERRIN authored Feb 03, 2020
  
  abe28251
- update blastp installation for prokka in all dockerfiles (for_build) · c98d5826
  Amandine PERRIN authored Feb 03, 2020
  
  c98d5826
- update blastp installation for prokka · 0e658f5f
  Amandine PERRIN authored Feb 03, 2020
  
  0e658f5f
- update blastp installation for prokka · c9e13fdf
  Amandine PERRIN authored Feb 03, 2020
  
  c9e13fdf
30 Jan, 2020 3 commits
- install last version of blastp · 2b3a42dc
  Amandine PERRIN authored Jan 30, 2020
  
  2b3a42dc
- install last version of blastp · 6282ecd2
  Amandine PERRIN authored Jan 30, 2020
  
  6282ecd2
- try to update blastp for prokka · c1cbeb57
  Amandine PERRIN authored Jan 30, 2020
  
  c1cbeb57
07 Oct, 2019 8 commits
- error installation fasttree · 9d854c79
  Amandine PERRIN authored Oct 07, 2019
  
  9d854c79
- small error dockerfile for test image · 2c2b202d
  Amandine PERRIN authored Oct 07, 2019
  
  2c2b202d
- build all test images · 101afc36
  Amandine PERRIN authored Oct 07, 2019
  
  101afc36
- Update mmseqs installation · 0e3574aa
  Amandine PERRIN authored Oct 07, 2019
  
  0e3574aa
- Install zlib to install prodigal · ecebd520
  Amandine PERRIN authored Oct 07, 2019
  
  ecebd520
- build image for mmseq and fastme · 43a64483
  Amandine PERRIN authored Oct 07, 2019
  
  43a64483
- Add build images for 'prodigal' and 'mafft' · 776a8d91
  Amandine PERRIN authored Oct 07, 2019
  
  776a8d91
- Add building image for 'ubuntu' and 'barrnap' · 429a9e80
  Amandine PERRIN authored Oct 07, 2019
  
  429a9e80